Miscellaneous scripts
updatemlst.pl
This Perl script will set up Linux PostgreSQL profile databases for publicly available MLST schemes by downloading configurations, allele sequences and allelic profiles from pubmlst.org. Once set up, it contains options to keep the databases up-to-date. You can link the resulting profiles databases to your own isolate database systems.
Further details and download ...
stars_setup.pl
This Perl script will set up STARS for the first time for species supported by pubmlst.org. Template databases for these MLST schemes are automatically downloaded and set up for the user
Further details and download ...
concat.pl
This Perl script will create a concatenated FASTA file from a list of allelic profiles and allele FASTA files. Allele files can be stored locally or retrieved automatically from a web site (e.g. pubmlst.org)