Recent database update activity
2024-05-09:- Campylobacter jejuni/coli: 4 isolates; 4 genomes
- Clostridioides difficile: 2 isolates; 2 MLST profiles
- Enterobacter cloacae: 2 alleles
- Klebsiella aerogenes: 1 MLST profile
- Mycoplasma hyosynoviae: 3 isolates; 3 genomes; 1 allele
- Neisseria spp.: 137 isolates; 1 genome; 13 alleles; 16 MLST profiles
- Pasteurella multocida: 45 isolates
- Streptococcus pneumoniae: 33 alleles; 18 cgMLST profiles
- Vibrio cholerae: 1 isolate; 1 MLST profile
- Bacillus cereus: 1 isolate; 1 allele; 1 MLST profile
- Bacteroides fragilis: 11 MLST profiles
- Burkholderia cepacia complex: 58 isolates
- Campylobacter jejuni/coli: 2 isolates
- Chlamydiales spp.: 4 alleles
- Clostridioides difficile: 2 alleles
- Enterobacter cloacae: 4 isolates; 4 genomes
- Escherichia spp.: 3 isolates; 7 alleles; 14 MLST (Achtman) profiles
- Glaesserella parasuis: 38 isolates; 38 genomes; 23 alleles; 21 MLST profiles
- Haemophilus influenzae: 1 isolate
- Klebsiella oxytoca: 2 isolates; 1 genome; 2 MLST profiles
- Lactococcus garvieae: 1 allele
- Mycoplasma genitalium: 62 isolates; 28 MG191-MG309 typing profiles
- Neisseria spp.: 1,472 isolates; 1 N. meningitidis cgMLST v3 profile
- Pseudomonas aeruginosa: 13 isolates; 2 genomes; 11 alleles; 12 MLST profiles
- Ribosomal MLST: 2 isolates; 5 alleles
- Salmonella spp.: 3 alleles; 3 MLST profiles
- Staphylococcus aureus: 21 isolates; 7 genomes; 7 alleles; 9 MLST profiles
- Streptococcus dysgalactiae: 18 isolates; 18 MLST profiles
- Streptococcus pneumoniae: 759 alleles; 516 cgMLST profiles
- Streptococcus suis: 10 isolates; 10 genomes
- Streptococcus uberis: 2 isolates; 2 genomes; 1,137 alleles
- Bacteroides fragilis: 8 alleles
- Burkholderia cepacia complex: 1,604 isolates; 11,422 alleles
- Campylobacter jejuni/coli: 21 isolates; 4 MLST profiles
- Campylobacter non-jejuni/coli: 1 isolate
- Cronobacter spp.: 2 isolates; 6 MLST profiles
- Enterobacter cloacae: 6 isolates; 6 genomes; 1 MLST profile
- Escherichia spp.: 3 genomes; 9,430 alleles; 5 MLST (Achtman) profiles
- Haemophilus influenzae: 25 isolates
- Mycoplasma gallisepticum: 1 isolate; 1 MLST#2 (Bekő) profile
- Mycoplasma genitalium: 3 isolates; 3 alleles; 3 MG191-MG309 typing profiles
- Neisseria spp.: 1,192 isolates; 1 genome; 8 NG MAST v2.0 profiles; 4 N. gonorrhoeae cgMLST v1.0 profiles; 5 N. gonorrhoeae cgMLST v2 profiles; 8 N. meningitidis cgMLST v3 profiles
- Pasteurella multocida: 2 isolates
- Ribosomal MLST: 18 isolates; 209 alleles; 257 rMLST profiles
- Salmonella spp.: 1 allele; 2 MLST profiles
- Staphylococcus aureus: 5 isolates; 1 allele; 14 MLST profiles
- Staphylococcus epidermidis: 8 isolates
- Streptococcus agalactiae: 2 isolates
- Streptococcus pneumoniae: 23 isolates; 5,841 alleles; 133 cgMLST profiles; 21 MLST profiles
- Streptococcus zooepidemicus: 2 isolates